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Table 2

Sequence types of Enterocytozoon bieneusi at the hypothetical protein 1 (hp1) and tubulin 1 (tub1) loci by internal transcribed spacer (ITS) genotype.

Group ITS genotype (No. of samples) No. of SNPs (No. of samples)
hp1 tub1
1 CHN4 (2) 2 SNPs (1) 4 SNPs (2)
3 SNPs (1)
CQR2 (8) 3 SNPs (1) 5 SNPs (6)
8 SNPs (5) 6 SNPs (1)
D (9) 3 SNPs (6) 3 SNPs (4)
4 SNPs (1) 4 SNPs (3)
5 SNPs (2)
Peru8 (1) 3 SNPs (1) 4 SNPs (1)
Peru16 (3) 4 SNPs (3) 5 SNPs (2)
PigEBITS7 (4) 7 SNPs (4) 9 SNPs (3)
Type IV (6) 3 SNPs (5) 3 SNPs (2)
4 SNPs (1) 4 SNPs (4)
2 BEB4 (8) 2 SNPs (5) 2 SNPs (5)
5 SNPs (1) 3 SNPs (3)
8 SNPs (2)
BEB6 (1) 27 SNPs (1) 11 SNPs (1)
I (8) 8 SNPs (8) 0 SNP (5)
4 SNPs (1)
J (8) 8 SNPs (8) 0 SNP (7)
4 SNPs (1)
PL1 (8) 10 SNPs (6) 5 SNPs (7)
PL2 (6) 10 SNPs (3) 5 SNPs (6)
3 WL4 (3) 1 SNP (1)* 5 SNPs (1)
15 SNPs (1)
28 SNPs (1) 8 SNPs (1)
4 WL2 (1) 35 SNPs (1) 41 SNPs (1)
WL26 (1) 38 SNPs (1) 41 SNPs (1)
WW6 (1) 34 SNPs (1) 40 SNPs (1)
5 BAT1 (1) 34 SNPs (1) 36 SNPs (1)
BAT2 (1) 34 SNPs (1) 35 SNPs (1)
KB-6 (5) 28 SNPs (1) 34 SNPs (1)
38 SNPs (1) 35 SNPs (2)
46 SNPs (1)
6 Camel-2 (1) 9 SNPs (1)
Horse2 (2) 10 SNPs (1) 4 SNPs (2)
13 SNPs (1)
Macaque1 (1) 9 SNPs (1)
Nig3 (1) 10 SNPs (1) 5 SNPs (1)
10 Row (3) 25 SNPs (3) 5 SNPs (3)
WL24 (1) 9 SNPs (1) 9 SNPs (1)

The reference sequences for the hp1 and tub1 loci in MicrosporidiaDB are EBI_21704 and EBI_21729, respectively.

*

The sequence is likely from a Group 1 genotype due to co-infection of two genotypes.

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