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Table 3

Representative genomes of Acanthamoeba spp. available and collected from GenBank, and corrected through information provided by Fuerst (2020).

Organism Strain Sequencing technology Genome size (Mb) Assembly access number Publication date Reference
A. astronyxis ATCC 30137 NA 83.4 GCA_000826245 January 2015
A. castellanii ATCC 50370 NA 115 GCA_000826485 January 2015
A. castellanii str. Neff ATCC 30010 Illumina GA IIx, 454 GS FLX Titanium and Sanger 42 GCA_000313135 January 2013 [14]
A. culbertsoni ATCC 30171 NA 55.5 GCA_000826265 January 2015
A. palestinensis ATCC 30870 NA 75.3 GCA_000826305 January 2015
A. lenticulata ATCC 30841 NA 66 GCA_000826285 January 2015
A. lugdunensis ATCC 50240 NA 99.4 GCA_000826425 January 2015
A. mauritaniensis ATCC 50253 NA 106.8 GCA_000826465 January 2015
A. triangularis ATCC 50254 NA 103.5 GCA_000826325 January 2015
Acanthamoeba sp. ATCC 50496 NA 115.6 GCA_000826505 January 2015
A. polyphaga ATCC 50372 NA 120.4 GCA_000826345 January 2015
A. polyphaga Linc Ap-1 IonTorrent 49.35 GCA_001567625 February 2016 [43]
A. quina ATCC 50241 NA 83.6 GCA_000826445 January 2015
A. rhysodes ATCC 30973 N/A 75.8 GCA_000826385 January 2015
A. royreba ATCC 30884 N/A 79.5 GCA_000826365 January 2015
A. comandoni ATCC Pra 287 Ion Torrent PGM 86.2 GCA_002025285 March 2017
A. lenticulata ATCC 50704 Ion Torrent PGM 74.7 GCA_002105255 April 2017
A. triangularis ATCC 50254 Illumina MiSeq 66.4 *CACVKS010000000 March 2020 [32]
A. pyriformis CR15 Illumina HiSeq 2500 683.1 **SRX2163158 January 2017 [72]

N/A = Information not available in BioProject placed in GenBank.

*

No public data with this accession in GenBank.

**

Transcriptome information only.

Unpublished, BioProject created by University of Liverpool: https://www.ncbi.nlm.nih.gov/bioproject/PRJEB7687.

Unpublished, created by AIT Austrian Institute of Technology: https://www.ncbi.nlm.nih.gov/assembly/GCA_002105255.1.

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