Application of the omics sciences to the study of Naegleria fowleri, Acanthamoeba spp., and Balamuthia mandrillaris: current status and future projections

Libia Zulema Rodriguez-Anaya; Ángel Josué Félix-Sastré; Fernando Lares-Villa; Luis Fernando Lares-Jiménez; Jose Reyes Gonzalez-Galaviz

doi:10.1051/parasite/2021033

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Volume 28 (2021)

Parasite, 28 (2021) 36

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Review Article

Table 2

Data from the assembled genomes of Naegleria spp.

Organism	Sequencing technology	Genome size (Mb)	%GC	ORFs	Strain	GenBank assembly accession	Data publication date	Reference
N. fowleri	Illumina HiSeq 2000 and Roche 454 – GS FLX	27.7	37	17,252	ATCC 30863	GCA_000499105	November 2013	[75]
N. fowleri	Illumina HiSeq and Roche 454 – GS FLX	27.7	36	12,677	V212	^*PRJNA562275	August 2019	[34]
N. fowleri	Illumina – Hiseq 2000	27.5	36	11,599	986	GCA_902703645	February 2020	[34]
N. fowleri	Oxford Nanopore – GridION	29.5	36.9	13,925	ATCC 30894	GCA_008403515	September 2019	[47]
N. gruberi	Sanger	40.9	33	15,727	NEG-M ATCC 30224	GCA_000004985	January 2010	[21]
N. lovaniensis	PacBio – RSII	30.9	37	15,195	ATCC 30569	GCA_003324165	July 2018	[48]

^*

For strain V212, BioProject number indicated because authors did not indicate GenBank assembly accession.

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