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Table 2
Relative density and categorization of 1-10 bp unit motif length microsatellites in the genomes of five Plasmodium species.
| Unit motif length (bp) | Features | P. falciparum 3D7 | P. vivax SAL-1 | P. malariae UG01 | P. ovale curtisi GH01 | P. knowlesi STRAIN-H |
|---|---|---|---|---|---|---|
| Mononucleotide (n = 1) | No. | 27,687 | 15,544 | 24,320 | 20,985 | 23,807 |
| Percentage (%)a | 32.66 | 74.46 | 50.919 | 71.756 | 74.378 | |
| No./Mbp | 1186.61 | 575.40 | 723.42 | 626.80 | 975.86 | |
| Length coverage | 644,936 | 317,981 | 506,974 | 485,595 | 567,513 | |
| Coverage/Mbp | 27,640.70 | 11,770.98 | 15,080.42 | 14,504.24 | 23,262.56 | |
| Dinucleotide (n = 2) | No. | 35,423 | 846 | 11,857 | 3721 | 2642 |
| Percentage (%)a | 41.779 | 4.053 | 24.86 | 12.724 | 8.254 | |
| No./Mbp | 1518.16 | 31.38 | 352.69 | 111.14 | 108.30 | |
| Length coverage | 1,155,503 | 22,208 | 350,048 | 86,288 | 85,158 | |
| Coverage/Mbp | 49,522.61 | 822.09 | 10,412.51 | 2577.34 | 3490.66 | |
| Trinucleotide (n = 3) | No. | 6944 | 595 | 1911 | 840 | 772 |
| Percentage (%)a | 8.19 | 2.85 | 4.001 | 2.872 | 2.412 | |
| No./Mbp | 297.61 | 22.03 | 56.84 | 25.09 | 31.64 | |
| Length coverage | 243,265 | 15,766 | 84,872 | 25,951 | 21,436 | |
| Coverage/Mbp | 10,425.87 | 583.62 | 2524.60 | 775.13 | 878.67 | |
| Tetranucleotide (n = 4) | No. | 6228 | 575 | 2247 | 686 | 646 |
| Percentage (%)a | 7.346 | 2.754 | 4.705 | 2.346 | 2.018 | |
| No./Mbp | 266.90 | 21.28 | 66.90 | 20.49 | 26.48 | |
| Length coverage | 172,622 | 18,218 | 120,340 | 26,431 | 23,432 | |
| Coverage/Mbp | 7398.24 | 674.39 | 3579.63 | 789.47 | 960.49 | |
| Pentanucleotide (n = 5) | No. | 2838 | 486 | 1510 | 841 | 809 |
| Percentage (%)a | 3.347 | 2.328 | 3.162 | 2.88 | 2.527 | |
| No./Mbp | 121.63 | 17.99 | 44.92 | 25.12 | 33.16 | |
| Length coverage | 98,990 | 16,494 | 65,863 | 27,158 | 34,798 | |
| Coverage/Mbp | 4242.52 | 610.57 | 1959.16 | 811.18 | 1426.38 | |
| Hexanucleotide (n = 6) | No. | 1635 | 523 | 1648 | 803 | 830 |
| Percentage (%)a | 1.928 | 2.505 | 3.45 | 2.746 | 2.593 | |
| No./Mbp | 70.07 | 19.36 | 49.02 | 23.98 | 34.02 | |
| Length coverage | 77,483 | 22,263 | 111,744 | 39,628 | 43,860 | |
| Coverage/Mbp | 3320.77 | 824.13 | 3323.93 | 1183.65 | 1797.84 | |
| Heptanucloetide (n = 7) | No. | 955 | 289 | 629 | 225 | 742 |
| Percentage (%)a | 1.126 | 1.384 | 1.317 | .769 | 2.318 | |
| No./Mbp | 40.93 | 10.70 | 18.71 | 6.72 | 30.41 | |
| Length coverage | 78,852 | 50,031 | 53,547 | 15,988 | 217,069 | |
| Coverage/Mbp | 3379.44 | 1852.04 | 1592.81 | 477.56 | 8897.74 | |
| Octanucleotide (n = 8) | No. | 1123 | 681 | 1353 | 383 | 872 |
| Percentage (%)a | 1.325 | 3.262 | 2.833 | 1.31 | 2.724 | |
| No./Mbp | 48.13 | 25.21 | 40.25 | 11.44 | 35.74 | |
| Length coverage | 65,740 | 39,529 | 124,078 | 25,271 | 68,224 | |
| Coverage/Mbp | 2817.49 | 1463.28 | 3690.82 | 754.82 | 2796.52 | |
| Nonanucleotide (n = 9) | No. | 1367 | 749 | 1066 | 465 | 474 |
| Percentage (%)a | 1.612 | 3.588 | 2.232 | 1.59 | 1.481 | |
| No./Mbp | 58.59 | 27.73 | 31.71 | 13.89 | 19.43 | |
| Length coverage | 102,348 | 46,073 | 108,343 | 37,044 | 36,635 | |
| Coverage/Mbp | 4386.44 | 1705.52 | 3222.77 | 1106.47 | 1501.68 | |
| Decanucleotide (n = 10) | No. | 586 | 587 | 1221 | 296 | 414 |
| Percentage (%)a | 0.691 | 2.812 | 2.556 | 1.012 | 1.293 | |
| No./Mbp | 25.10 | 21.73 | 36.319 | 8.84 | 16.97 | |
| Length coverage | 41,816 | 44,108 | 137,797 | 24,354 | 32,881 | |
| Coverage/Mbp | 1792.15 | 1632.78 | 4098.90 | 727.43 | 1347.80 |
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