Table 3
Annotations and gene organization of Rhabdias macrocephalum n. sp. Positive number in the “Gap or overlap” column indicates the length of intergenic sequence, and the negative number indicates the length (absolute number) that adjacent genes overlap (negative sign). The forward strand is marked as “+” and the reverse strand as “−”.
| Gene | Type | Start | End | Length | Start Codon | Stop Codon | Anticodon | Strand | Gap or overlap |
|---|---|---|---|---|---|---|---|---|---|
| cox1 | CDS | 1 | 1623 | 1623 | TTG | TAA | + | 64 | |
| nad3 | CDS | 1688 | 2029 | 342 | ATT | TAG | + | 6 | |
| tRNA-Pro (P) | tRNA | 2036 | 2092 | 57 | UGG | + | 21 | ||
| cox2 | CDS | 2114 | 2830 | 717 | ATT | TAA | + | 1 | |
| tRNA-His (H) | tRNA | 2832 | 2887 | 56 | GUG | + | 0 | ||
| rrnL | rRNA | 2888 | 3850 | 963 | + | 0 | |||
| nad5 | CDS | 3851 | 5434 | 1584 | ATT | TAA | + | 0 | |
| NCR1 | Non-coding region | 5435 | 5875 | 441 | + | 0 | |||
| tRNA-Ala (A) | tRNA | 5876 | 5930 | 55 | UGC | + | 0 | ||
| NCR2 | Non-coding region | 5931 | 6351 | 421 | + | 0 | |||
| tRNA-Met (M) | tRNA | 6352 | 6414 | 63 | CAU | + | 0 | ||
| NCR3 | Non-coding region | 6415 | 6853 | 439 | + | 0 | |||
| tRNA-Cys (C) | tRNA | 6854 | 6910 | 57 | GCA | + | 0 | ||
| tRNA-Val (V) | tRNA | 6911 | 6967 | 57 | UAC | + | 1 | ||
| tRNA-Asp (D) | tRNA | 6969 | 7024 | 56 | GUC | + | 6 | ||
| tRNA-Gly (G) | tRNA | 7031 | 7086 | 56 | UCC | + | 23 | ||
| nad6 | CDS | 7110 | 7565 | 456 | ATG | TAA | + | 2 | |
| nad4L | CDS | 7568 | 7798 | 231 | ATA | TAG | + | 0 | |
| tRNA-Trp (W) | tRNA | 7799 | 7854 | 56 | UCA | + | 2 | ||
| tRNA-Glu (E) | tRNA | 7857 | 7918 | 62 | UUC | + | 0 | ||
| rrnS | rRNA | 7919 | 8623 | 705 | + | 0 | |||
| tRNA-Ser2 (S2) | tRNA | 8624 | 8677 | 54 | UGA | + | 5 | ||
| tRNA-Asn (N) | tRNA | 8683 | 8738 | 56 | GUU | + | 5 | ||
| tRNA-Tyr (Y) | tRNA | 8744 | 8800 | 57 | GUA | + | 0 | ||
| nad1 | CDS | 8801 | 9673 | 873 | TTG | TAA | + | 1 | |
| atp6 | CDS | 9675 | 10274 | 600 | ATT | TAA | + | 0 | |
| tRNA-Lys (K) | tRNA | 10275 | 10337 | 63 | UUU | + | 34 | ||
| tRNA-Leu2 (L2) | tRNA | 10372 | 10427 | 56 | UAA | + | 0 | ||
| tRNA-Ser1 (S1) | tRNA | 10428 | 10480 | 53 | UCU | + | 0 | ||
| nad2 | CDS | 10481 | 11323 | 843 | TTG | TAA | + | 0 | |
| tRNA-Ile (I) | tRNA | 11324 | 11389 | 66 | GAU | + | 0 | ||
| tRNA-Arg (R) | tRNA | 11390 | 11445 | 56 | ACG | + | 6 | ||
| tRNA-Gln (Q) | tRNA | 11452 | 11506 | 55 | UUG | + | 2 | ||
| tRNA-Phe (F) | tRNA | 11509 | 11563 | 55 | GAA | + | 0 | ||
| cytb | CDS | 11564 | 12673 | 1110 | TTG | TAA | + | 1 | |
| tRNA-Leu1 (L1) | tRNA | 12675 | 12730 | 56 | UAG | + | 0 | ||
| cox3 | CDS | 12731 | 13498 | 768 | TTG | TAG | + | 1 | |
| tRNA-Thr (T) | tRNA | 13500 | 13555 | 56 | UGU | + | 0 | ||
| nad4 | CDS | 13556 | 14785 | 1230 | TTG | TAG | + |
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