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Table 3
Genetic diversity indices of schistosome worms collected in cattle in three Malian slaughterhouses. Expected (He) and observed (Ho) heterozygosity, total number of alleles (A), allelic richness (Ar), and inbreeding coefficient (Fis) for each microsatellite locus and for each sampled site in Mali.
| Slaughterhouse | Sh9 | Sh3 | C102 | Sh1 | Sh14 | Sh6 | C111 | Sh7 | Sh13 | Sh4 | Sh11 | Sh15 | Sh2 | Sh5 | Sh10 | Sh12 | Moy | Std |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CBS (n = 55) | ||||||||||||||||||
| He exp | 0.84 | 0.89 | 0.89 | 0.90 | 0.65 | 0.76 | 0.71 | 0.91 | 0.92 | 0.89 | 0.62 | 0.40 | 0.95 | 0.72 | 0.83 | 0.64 | 0.78 | 0.12 |
| He Obs | 0.40 | 0.71 | 0.24 | 0.67 | 0.67 | 0.33 | 0.44 | 0.66 | 0.90 | 0.87 | 0.48 | 0.32 | 0.96 | 0.29 | 0.71 | 0.58 | 0.57 | 0.22 |
| A | 13 | 16 | 13 | 13 | 8 | 8 | 8 | 20 | 17 | 18 | 10 | 7 | 22 | 7 | 12 | 10 | 12.63 | 3.88 |
| Ar | 10.83 | 13.94 | 12.42 | 11.84 | 6.51 | 7.06 | 6.99 | 16.11 | 15.64 | 14.87 | 8.37 | 5.74 | 19.55 | 6.83 | 10.55 | 7.69 | 10.93 | 3.48 |
| Fis | 0.51 | 0.20 | 0.73 | 0.25 | −0.03 | 0.56 | 0.38 | 0.28 | 0.02 | 0.01 | 0.22 | 0.19 | −0.02 | 0.60 | 0.14 | 0.09 | 0.26 | 0.19 |
| SS (n = 42) | ||||||||||||||||||
| He exp | 0.75 | 0.87 | 0.88 | 0.90 | 0.67 | 0.76 | 0.67 | 0.88 | 0.93 | 0.89 | 0.52 | 0.23 | 0.93 | 0.68 | 0.76 | 0.58 | 0.74 | 0.14 |
| He Obs | 0.46 | 0.82 | 0.30 | 0.89 | 0.59 | 0.40 | 0.54 | 0.54 | 0.91 | 0.88 | 0.50 | 0.21 | 0.94 | 0.31 | 0.83 | 0.63 | 0.60 | 0.24 |
| A | 9 | 17 | 14 | 12 | 5 | 7 | 7 | 12 | 17 | 15 | 4 | 3 | 16 | 6 | 8 | 3 | 9.69 | 4.40 |
| Ar | 8.02 | 15.25 | 14.00 | 11.73 | 4.99 | 6.80 | 6.49 | 11.49 | 16.49 | 14.09 | 3.91 | 2.69 | 15.67 | 5.83 | 7.87 | 3.00 | 9.27 | 4.23 |
| Fis | 0.38 | 0.06 | 0.69 | 0.01 | 0.12 | 0.47 | 0.19 | 0.39 | 0.02 | 0.01 | 0.05 | 0.08 | −0.02 | 0.54 | −0.11 | −0.09 | 0.17 | 0.20 |
| KS (n = 69) | ||||||||||||||||||
| He exp | 0.56 | 0.83 | 0.69 | 0.16 | 0.36 | 0.27 | 0.22 | 0.21 | 0.94 | 0.91 | 0.81 | 0.19 | 0.82 | 0.28 | 0.68 | 0.83 | 0.55 | 0.27 |
| He Obs | 0.10 | 0.60 | 0.03 | 0.06 | 0.3 | 0.07 | 0.2 | 0.08 | 0.9 | 0.9 | 0.5 | 0.13 | 0.8 | 0.09 | 0.72 | 0.90 | 0.53 | 0.30 |
| A | 6 | 19 | 11 | 7 | 4 | 6 | 5 | 5 | 21 | 15 | 18 | 5 | 21 | 5 | 8 | 10 | 10.38 | 5.34 |
| Ar | 4.69 | 14.87 | 10.33 | 4.42 | 3.41 | 5.20 | 4.01 | 4.45 | 18.14 | 12.83 | 14.15 | 4.17 | 16.08 | 4.59 | 7.33 | 8.79 | 8.59 | 4.38 |
| Fis | 0.79 | 0.29 | 0.96 | 0.62 | 0.21 | 0.73 | 0.06 | 0.65 | 0.06 | −0.02 | 0.33 | 0.27 | 0.01 | 0.69 | −0.04 | −0.09 | 0.34 | 0.30 |
| Total (n = 166) | ||||||||||||||||||
| A | 15 | 25 | 19 | 14 | 8 | 10 | 10 | 22 | 24 | 20 | 18 | 7 | 26 | 8 | 13 | 11 | 15.63 | 5.58 |
| Ar | 8.66 | 15.29 | 14.02 | 11.00 | 5.26 | 7.05 | 5.96 | 13.08 | 17.39 | 13.70 | 10.79 | 4.36 | 19.61 | 7.02 | 10.50 | 7.95 | 10.73 | 3.63 |
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