Open Access
Table 2
Summary of mapping statistics.
| Sample code | Sequencing data (Gb) | Total reads | Reads aligned | Mapping rate % | Mismatch rate | Average quality | Reads aligned in pairs | Reads aligned in pairs % | Mean read length | Average insert size | Median genome coverage % | Depth |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ST2020m | 13.77 | 90,489,190 | 87,048,798 | 96.20% | 0.03 | 35.8 | 86,444,586 | 99.31% | 150 | 340.6 | 93.58% | 34 |
| ST2020f | 13.98 | 91,349,560 | 87,786,731 | 96.10% | 0.03 | 35.8 | 87,209,346 | 99.34% | 150 | 334.3 | 93.85% | 35 |
| ST2013m | 14.40 | 94,724,430 | 90,947,858 | 96.01% | 0.03 | 35.8 | 90,335,934 | 99.33% | 150 | 330.7 | 93.61% | 36 |
| ST2013f | 14.01 | 91,737,504 | 87,797,151 | 95.70% | 0.03 | 35.8 | 87,234,312 | 99.36% | 150 | 318.1 | 93.69% | 35 |
| HX2013m | 14.21 | 93,295,110 | 89,812,077 | 96.27% | 0.02 | 35.8 | 89,265,388 | 99.39% | 150 | 326.2 | 95.04% | 36 |
| HX2013f | 14.12 | 92,149,586 | 88,666,850 | 96.22% | 0.02 | 35.8 | 88,125,512 | 99.39% | 150 | 332.7 | 95.18% | 35 |
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