Table 3
Numbers of top-hits of Rhabdosynochus viridisi and Scutogyrus longicornis ORFs matching to sequences of other species. Information was obtained from a similarity search analysis using TRAPID and the EggNOG database. Top hits obtained with sequences from other Platyhelminthes are shown.
| R. viridisi unfiltered ORF | R. viridisi filtered ORF (first filtering: bacteria + fish) | R. viridisi filtered ORF (second filtering: bacteria + fish) | S. longicornis unfiltered ORF | S. longicornis filtered ORF (first filtering: bacteria + fish) | S. longicornis filtered ORF (second filtering: bacteria + fish) | G. salaris | E. nipponicum | P. xenopodis | S. mediterranea | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Hits | 23,274 | Hits | 16,448 | Hits | 11,108 | Hits | 15,417 | Hits | 14,031 | hits | 12,273 | Hits | 8699 | Hits | 16,499 | Hits | 11,353 | Hits | 21,189 |
| Sm | 11,297 (48.54%) | Sm | 9547 (58.04%) | Sm | 7321 (65.91%) | Sm | 8880 (57.6%) | Sm | 8247 (58.78%) | Sm | 7854 (63.99%) | Sm | 4865 (55.93%) | Sm | 10,583 (64.14%) | Sm | 8327 (73.35%) | Sm | 5756 (27.17%) |
| On | 699 (3%) | Bf | 455 (2.77%) | Bf | 310 (2.79%) | Bf | 466 (3.02%) | Bf | 414 (2.95%) | Bf | 330 (2.69%) | Bf | 224 (2.58%) | Bf | 417 (2.53%) | Bf | 253 (2.23%) | Bf | 1505 (7.1%) |
| Bf | 608 (2.61%) | Sp | 259 (1.57%) | Sp | 174 (1.57%) | Sp | 402 (2.61%) | Sp | 377 (2.69%) | Sp | 266 (2.17%) | Sp | 123 (1.41%) | Sp | 275 (1.67%) | Sp | 199 (1.75%) | Sp | 819 (3.87%) |
| Ga | 431 (1.85%) | On | 249 (1.51%) | Dp | 135 (1.22%) | Ap | 269 (1.74%) | Ap | 214 (1.53%) | Ap | 186 (1.52%) | Dr | 119 (1.37%) | Dp | 203 (1.23%) | Nv | 107 (0.94%) | Hm | 625 (2.95%) |
| Sp | 396 (1.7%) | Ga | 183 (1.11%) | Is | 134 (1.21%) | Tc | 214 (1.39%) | Tc | 209 (1.49%) | Tc | 185 (1.51%) | Dp | 117 (1.34%) | Nv | 192 (1.16%) | Is | 104 (0.92%) | Tc | 616 (2.91%) |
| Vs | 353 (1.52%) | Dr | 183 (1.11%) | Tc | 117 (1.05%) | Hm | 212 (1.38%) | Hm | 201 (1.43%) | Dp | 157 (1.28%) | Tc | 116 (1.33%) | Dr | 172 (1.04%) | Dp | 99 (0.87%) | Dp | 528 (2.49%) |
Abbreviations: Ap, Acyrthosiphon pisum; Bf, Branchiostoma floridae; Dp, Daphnia pulex; Dr, Danio rerio; Ga, Gasterosteus aculeatus; Hm, Hydra magnipapillata; Is, Ixodes scapularis; Nv, Nematostella vectensis; On, Oreochromis niloticus; Sm, Schistosoma mansoni; Sp, Strongylocentrotus purpuratus; Tc, Tribolium castaneum; Vs, Vibrio sinaloensis.
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