Open Access
Table 2
Information on contaminating sequences in the transcriptomes of Rhabdosynochus viridisi and Scutogyrus longicornis.
| Filter | Contaminant taxa | Number of contaminant sequences | % GC | Average sequence | Number of bases | |
|---|---|---|---|---|---|---|
| First filtering (assembly) | S. longicornis contigs (first filtering) | Bacteria | 292 | 47.77 | 1362.50 | 397,850 |
| Tilapia | 3285 | 43.16 | 1776.21 | 5,834,843 | ||
| Viruses and fungi | 195 | 48.27 | 1319.91 | 258,703 | ||
| R. viridisi contigs (first filtering) | Bacteria | 11,284 | 45.25 | 2085.79 | 23,536,059 | |
| Snooks | 27,133 | 45.50 | 1364.26 | 37,016,466 | ||
| Viruses and fungi | 469 | 49.28 | 3112.80 | 1,459,904 | ||
| Second filtering (ORF) | S. longicornis ORF (second filtering) | Bacteria | 55 | 45.80 | 682.80 | 37,554 |
| Tilapia | 1110 | 44.66 | 706.24 | 783,927 | ||
| R. viridisi ORF | Vibrio spp. | 2071 | 45.99 | 621.04 | 1,286,169 | |
| Snooks and tilapia | 7442 | 51.93 | 754.36 | 5,613,963 | ||
| Third filtering (ORF) | S. longicornis ORF (third filtering) | Non-Protostomia | 2454 | 45.81 | 762.06 | 1,870,089 |
| R. viridisi ORF (third filtering) | Non-Protostomia | 7937 | 50.9 | 714.58 | 5,671,620 | |
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