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Table 3

Intra-assemblage substitutions in the beta-giardin (bg), glutamate dehydrogenase (gdh), and triose phosphate isomerase (tpi) assemblage E gene sequences.

Sequence (no.) Nucleotide positions GenBank ID
bg 65 170 383 413 428
Ref. sequence C A C T C KT922248
E1 (11) C MK442898
E2 (12) MK442899
E3 (7)a G MK442900
E4 (1)a T MK442901
E5 (1) T T C MK442902
gdh 131 272 359 445
Ref. sequence A T G G KT369778
E1 (26) MK442904
E2 (14) G MK442905
E3 (9)a A MK442906
E4 (12) G A MK442907
E5 (2) G MK442908
E6 (1)a G G
tpi 29 87 137 308
Ref. sequence G G A T KT369763
E1 (10) MK442912
E2 (5) A G MK442913
E3 (4) A C MK442914
E4 (1)a C MK442915

–: indicates that the sequence is the same as the reference sequence.

a

Novel sequence.

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