Open Access
Research Article
Table 1
Genome-wide coverage and density of microsatellites in the genomes of five Plasmodium species.
| Type | Microsatellite features | P. falciparum 3D7 | P. vivax SAL-1 | P. malariae UG01 | P. ovale curtisi GH01 | P. knowlesi STRAIN-H |
|---|---|---|---|---|---|---|
| Genome-wide microsatellites | Sequence analyzed (bp) | 23,332,839 | 27,013,980 | 33,618,035 | 33,479,509 | 24,395,979 |
| Genomic GC content (%) | 19.34 | 42.19 | 24.38 | 28.48 | 38.60 | |
| No. of microsatellites | 84,786 | 20,875 | 47,762 | 29,245 | 32,008 | |
| Microsatellite density (No./Mbp) | 3633.76 | 772.75 | 1420.73 | 873.52 | 1312.02 | |
| Microsatellite occurrence per 2 Kb | 7.30 | 1.55 | 2.84 | 1.75 | 2.62 | |
| Total length of microsatellite (bp) | 2,698,077 | 591,020 | 1,663,135 | 793,213 | 1,129,172 | |
| Microsatellite coverage (bp/Mbp) | 115,634.32 | 21,878.30 | 49,471.51 | 23,692.49 | 46,285.17 | |
| Perfect microsatellites (%) | 56.09 | 70.22 | 61.71 | 76.70 | 71.32 | |
| Genome content by microsatellite (%) | 11.56 | 2.19 | 4.95 | 2.37 | 4.63 | |
| CDS microsatellites | No. of microsatellites | 9284 | 1766 | 4107 | 2364 | 1447 |
| Microsatellite density (No./Mbp) | 397.89 | 65.37 | 122.17 | 70.61 | 59.31 | |
| Total length of microsatellites (bp) | 367,916 | 59,733 | 184,537 | 83,447 | 43,055 | |
| Microsatellite coverage (bp/Mbp) | 15,768.16 | 2211.19 | 5489.23 | 2492.48 | 1764.84 | |
| Perfect microsatellites (%) | 47.73 | 50.23 | 48.31 | 56.98 | 59.23 |
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