Table 1
Polymorphism and genetic diversity of T. callipaeda cox1 sequences discovered across various countries, continents, and hosts globally, based on the cox1 613-bp alignment dataset.
| Origin | N | GC% | VS | H | Hd (SD) | π (SD) | Lists of GenBank accession numbers utilised for analysis |
|---|---|---|---|---|---|---|---|
| Country | |||||||
| China | 47 | 34.4 | 19 | 18 | 0.908 (0.023) | 0.00688 (0.00056) | KY908318–KY908320, MF795663–MF795694, MN719909, MN719911–MN719914, MT040339–MT040344, NC018363 |
| Japan | 26 | 34.7 | 14 | 2 | 0.517 (0.031) | 0.01181 (0.00072) | AB852543–AB852550, AB538283, LC790039, LC746896–LC746898, LC818871–LC818880, PP094558, PV291673–PV291674 |
| India | 1 | 35.7 | 0 | 1 | 0 | 0 | PX482520 |
| Romania | 8 | 35.6 | 0 | 1* | 0 | 0 | KT716012–KT716013, KP087796, MN176281–MN176282, MH622760, OQ298931, PQ600880, PX503837 |
| Hungary | 7 | 35.6 | 0 | 1* | 0 | 0 | PX498019–PX498025 |
| Slovakia | 7 | 35.6 | 0 | 1* | 0 | 0 | KY476400, MF155930, MF578281, MK546436–MK546439 |
| Portugal | 3 | 35.6 | 0 | 1* | 0 | 0 | KX033489, OM327770, OM470911 |
| Serbia | 3 | 35.6 | 0 | 1* | 0 | 0 | KJ433982–KJ433983, OP696980 |
| Estonia | 2 | 35.6 | 0 | 1* | 0 | 0 | PX498064–PX498065 |
| Greece | 2 | 35.6 | 0 | 1* | 0 | 0 | MG913802, OK662943 |
| Italy | 2 | 35.6 | 0 | 1* | 0 | 0 | OM462655, ON713991 |
| Moldova | 1 | 35.6 | 0 | 1* | 0 | 0 | MN163032 |
| Spain | 1 | 35.6 | 0 | 1* | 0 | 0 | PX381501 |
| Austria | 1 | 35.6 | 0 | 1* | 0 | 0 | PQ600880 |
| USA | 3 | 35.6 | 0 | 1* | 0 | 0 | MW570733, OR982681, PP739308 |
| Worldwide | 114 | 34.9 | 29 | 22 | 0.839 (0.026) | 0.01305 (0.00049) | Accession numbers from 15 aforementioned countries |
| Continent | |||||||
| Asia | 74 | 34.5 | 29 | 21 | 0.905 (0.016) | 0.01069 (0.00076) | Accession numbers from China, Japan, and India |
| Europe | 37 | 35.6 | 0 | 1* | 0 | 0 | Accession numbers from Romania, Hungary, Slovakia, Portugal, Serbia, Estonia, Greece, Italy, Moldova, Spain, and Austria |
| Americas | 3 | 35.6 | 0 | 1* | 0 | 0 | Reference sequences from the USA |
| Host | |||||||
| Humans | 42 | 34.5 | 27 | 14 | 0.897 (0.026) | 0.00963 (0.00111) | AB538283, KY908318–KY908320, LC790039, MF795663–MF795694, OP696980, OM327770, OM470911, PP094558, PQ600880 |
| Canidae | 47 | 35.1 | 22 | 9 | 0.693 (0.064) | 0.01206 (0.00117) | AB852543–AB852548, AB852550, KJ433982, KP087796, KT716012–KT716013, KY476400, LC818874–LC818875, LC818878–LC818879, LC781880, LC746896, MF578281, MF155930, MG913802, MK546436–MK546439, MN163032, MN719909, MT040339–MT040344, MW570733, NC018363, OM462655, PX482520, PX498022–PX498025, PX498019–PX498021, PX498064–PX498065 |
| Felidae | 7 | 35.2 | 14 | 4 | 0.714 (0.181) | 0.00994 (0.00275) | AB852549, KJ433983, MH622760, MN719911, MN719913, OQ298931, OR982681 |
| Mustelidae | 6 | 35.2 | 21 | 3 | 0.733 (0.155) | 0.01740 (0.00356) | LC818872, MN176281–MN176282, PV291673–PV291674, PX381501 |
| Ursidae | 6 | 35.3 | 21 | 4 | 0.800 (0.172) | 0.01381 (0.00482) | LC818873–LC818874, MN719914, OK662943, PP739308, PX503837 |
| Procyonidae | 2 | 34.7 | 14 | 2 | 1.000 (0.500) | 0.02284 (0.01142) | LC746897–LC746898 |
| Viverridae | 2 | 34.7 | 14 | 2 | 1.000 (0.500) | 0.02284 (0.01142) | LC818871, LC818876 |
| Leporidae | 1 | 35.1 | 0 | 1 | 0 | 0 | KX033489 |
| Suidae | 1 | 35.3 | 0 | 1 | 0 | 0 | MN719912 |
Note: N, number of sequences analysed; GC%, percentage of G + C content; VS, number of variable sites; H, number of haplotypes; Hd, haplotype diversity; π, nucleotide diversity; SD, standard deviation. *Identical haplotype.
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