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Table 2
Intra-assemblage substitutions in bg, tpi and gdh sequences within assemblage B and assemblage E.
| Subtypes (the number of isolates) | Nucleotide positions and substitutions |
GenBank IDs | ||||
|---|---|---|---|---|---|---|
| 34 | 53 | 113 | 318 | 370 | ||
| bg | ||||||
| B (Ref. sequence) | A | C | C | G | A | KJ888980 |
| rbg1 (n = 18) | A | C | C | G | A | MN123235 |
| E (Ref. sequence) | A | G | A | A | C | KY769090 |
| rbg2 (n = 1) | A | G | A | A | T | MN123236 |
| gdh | ||||||
| B (Ref. sequence) | C | A | C | T | C | EU594666 |
| rgdh1 (n = 4) | C | A | C | C | C | MN123237 |
| rgdh2 (n = 1) | C | A | T | T | C | MN123238 |
| tpi | ||||||
| B (Ref. sequence) | T | T | T | A | T | HQ666894 |
| rtpi1 (n = 8) | T | T | T | A | T | MN123234 |
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