Open Access
Table 2
Alignment statistics of reads and reference genome.
| Alignment types | CE-R | CE-NR | CK |
|---|---|---|---|
| Total reads | 46934632 | 47203918 | 47241022 |
| Total base pairs | 4224116880 | 4248352620 | 4251691980 |
| Total mapped reads | 35950168(76.60%) | 38570247 (81.71%) | 35662569 (75.49%) |
| Perfect matched reads | 24082846 (51.31%) | 24897763 (52.75%) | 21930554 (46.42%) |
| ≤5 bp Mismatched reads | 11867322 (25.28%) | 13672484 (28.96%) | 13732015 (29.07%) |
| Unique match | 30693890 (65.40%) | 27695773 (58.67%) | 28046058 (59.37%) |
| Multi-position match | 5256278 (11.20%) | 10874474 (23.04%) | 7616511 (16.12%) |
| Total unmapped reads | 10984464 (23.40%) | 8633671 (18.29%) | 11578453 (24.51%) |
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