Open Access
Research Article

Table 2

Alignment statistics of reads and reference genome.

Alignment types CE-R CE-NR CK
Total reads 46934632 47203918 47241022
Total base pairs 4224116880 4248352620 4251691980
Total mapped reads 35950168(76.60%) 38570247 (81.71%) 35662569 (75.49%)
Perfect matched reads 24082846 (51.31%) 24897763 (52.75%) 21930554 (46.42%)
≤5 bp Mismatched reads 11867322 (25.28%) 13672484 (28.96%) 13732015 (29.07%)
Unique match 30693890 (65.40%) 27695773 (58.67%) 28046058 (59.37%)
Multi-position match 5256278 (11.20%) 10874474 (23.04%) 7616511 (16.12%)
Total unmapped reads 10984464 (23.40%) 8633671 (18.29%) 11578453 (24.51%)

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